ConCavity
Software for Deep Analysis of PDB Structures and Mechanism Discovery
Boosting Protein–Ligand Binding Pose Prediction and Virtual Screening Based on Residue–Atom Distance Likelihood Potential and Graph Transformer | Journal of Medicinal Chemistry
Predicting protein-peptide interaction sites using distant protein complexes as structural templates | Scientific Reports
Computational prediction of disordered binding regions - ScienceDirect
Automatic generation of bioinformatics tools for predicting protein-ligand binding sites. - Abstract - Europe PMC
binding-sites · GitHub Topics · GitHub
Proteochemometric tool for MHC class II binding prediction.
Modelling peptide–protein complexes: docking, simulations and machine learning | QRB Discovery | Cambridge Core
IJMS | Free Full-Text | Advances in Molecular Dynamics Simulations and Enhanced Sampling Methods for the Study of Protein Systems
Workflow of binding sites detection. Each protein chain submitted would... | Download Scientific Diagram
Most widely used tools for transcription factor binding site prediction — Bioinformatics Review
Frontiers | RASPD+: Fast Protein-Ligand Binding Free Energy Prediction Using Simplified Physicochemical Features
A deep-learning framework for multi-level peptide–protein interaction prediction | Nature Communications
PepSite
Guiding the choice of appropriate binding site comparison tools. (A)... | Download Scientific Diagram
Molecules | Free Full-Text | Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery
Kihara Lab - Software
Frontiers | Prediction of DNA-Binding Protein–Drug-Binding Sites Using Residue Interaction Networks and Sequence Feature
ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction | Nature Methods
DeepBindPPI: Protein–Protein Binding Site Prediction Using Attention Based Graph Convolutional Network | The Protein Journal
Exploring the computational methods for protein-ligand binding site prediction - Computational and Structural Biotechnology Journal
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks | PNAS
